rs30940300 SNP Detail

Summary

• ID
  rs30940300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90404368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTCAGA CTCTCCACAA
  ACCTCAGAAG GCACCAGCCC TGTGCTCCTT TTTCTCATGG CAGTCAAAGC TGTGCAACAG
  GCTTCTACCA GCTAAGCCAT GAAGCCCTAG GTGGGGTTCT GCATCACGAT AGCCACAGGA
  AAAGCATGCA CAGTGTTGCT TTAGAACTAC GTCAGTATTT GAGTGAGTTT ACACCAAACT
  R
  TCCCAGGGTT CCTTTTGCCC TCCAGGAGCC CCCACCCAGC TCAGTACTTA CTGTCTTCAA
  CCATTTTCAC GGAGAACCTA GAGGACCGTG CCTTGAACGC CATGGCTGAG GACCAACCGG
  TGTGCAAAGC TTGGCCTTAG CTGAAGCAGA TTCTCGCCTG GAGAGTGACA CAGTACTTGA
  GAGGATGGTT CCCCCAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45979867	mCV23436792	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss133377553	ENSMUSSNP5330186	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30940300					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90404368 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				Noncoding-Transcript-Variant
Cpgi17720	CpG island 17720			992 bp proximal
Gm53295	predicted gene, 53295			152 bp upstream
Gm67990	predicted gene, 67990			1121 bp upstream
Rr634196	regulatory region 634196			642 bp proximal
Rr634197	regulatory region 634197			999 bp proximal
Rr634198	regulatory region 634198			1174 bp proximal
Rr634199	regulatory region 634199			1401 bp proximal
Rr634200	regulatory region 634200			1493 bp proximal
Tssr57646	transcription start site region 57646			1134 bp upstream
Tssr62021	transcription start site region 62021			1015 bp downstream