ACATAGATGT GGGTAGAAGG CAGGATCTGT GGGCAGTCCT GAGGACAGCA AAGCACTGGC TGAGCTGGGT CTGATGGCAG CAAGAGGTGC AAGTTCCACT GCAGCCCAGG CTATGGGGAC TCACAAAGCC CAGGTTCCCT GTGTCACTCT GAATGTGGGC ACCGCAAAGA CAGTGGTCTT CAGGTCCTGC TCCAACCAGG M TGTGGCTGCA CGGGGCTAGC CTTTTACTCT TGCCATATTC TAGGCCCTCA CTATTCACTC TCGTGGCCAC AGGTACCCCA TCTGGCCCAT AGCTGCAAAG ACTTGAAGCA GGAGCCAAAA ACAGGGTGCT GGGGTAGCAG GCTCTCAGCT GGGGGCCCGT GGAGTGTAAA AATAGCCTGG GCCCTGTAGA AAAACAGCAG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47999935 | NES11908738 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | A | A | A | C | A | A | A | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30940555 | SNP | A | A | A | A | A | A | A | A | A | C | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47999935 | NES11908738 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr6:89314496 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Plxna1 | plexin A1 | within coordinates | ||||||
Rr137390 | regulatory region 137390 | 1905 bp proximal | ||||||
Rr141614 | regulatory region 141614 | within coordinates | ||||||
Rr150842 | regulatory region 150842 | 1297 bp distal | ||||||
Rr150843 | regulatory region 150843 | 706 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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