TGCTC CAACCAGGAT GTGGCTGCAC R GGGCTAGCCT TTTACTCTTG CCATA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
DBA/2J |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47999937 | NES11908739 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | A | A | G | A | G | A | ||||
ss133371773 | ENSMUSSNP6390890 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | A | |||||||||
ss321851929 | CHEV_6_89287520 | CHEVERUD | SCREENING_POP | f | SNP | G | A | ||||||||||
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
DBA/2J |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30940557 | SNP | A | A | G | G | A | A | G | G | A | G | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47999937 | NES11908739 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr6:89314508 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Plxna1 | plexin A1 | within coordinates | ||||||
Rr137390 | regulatory region 137390 | 1893 bp proximal | ||||||
Rr141614 | regulatory region 141614 | within coordinates | ||||||
Rr150842 | regulatory region 150842 | 1309 bp distal | ||||||
Rr150843 | regulatory region 150843 | 694 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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