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rs30940563 SNP Detail
Summary
  • ID
    rs30940563
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr6:89314958 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGGCTGGCA GCAGCCTCAG
    GAGGAGGCGA CCCGTGGGAG CGTGTGGAGC AGCTTTAAAT AGGGACGCTG AAAACAGGCC
    TGATCCCTGG GGACTGGCTT GGCTCCCAAG ATGTAGGCCC AGGATCTGCT CTGCAGAGCC
    CAAAGAGCCT GACCTCTGAC CCAGCCTCTC ACGGTTTGAC CCTAGAAGAT CTGGACAGGC
    K
    CAGTGGGCAA GACTGTGGGA TGGCCCTGTG TTCACTGGCC ACCAGCCCCA ACTCAGGTGG
    CAGCCCTGGA GAAGACACTG GTATGCAGGG CCACATCCAC ATTGCTGTCT TCCATACCAT
    CTGAGGAGCA CTTGGAGACT ATACCCCAAG ACTCAGGCTG TGATGGGACC TAGCTGAGAG
    AACAGCAACA ACTTAGTGTC                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47999943 NES11908743 PERLEGEN MM_PANEL2 f SNP G G G G G G T G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30940563 SNP G G G G G G T G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47999943 NES11908743 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:89314958 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Plxna1 plexin A1 within coordinates
Rr137390 regulatory region 137390 1443 bp proximal
Rr141614 regulatory region 141614 within coordinates
Rr150842 regulatory region 150842 1759 bp distal
Rr150843 regulatory region 150843 244 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory