ATGGCTGGCA GCAGCCTCAG GAGGAGGCGA CCCGTGGGAG CGTGTGGAGC AGCTTTAAAT AGGGACGCTG AAAACAGGCC TGATCCCTGG GGACTGGCTT GGCTCCCAAG ATGTAGGCCC AGGATCTGCT CTGCAGAGCC CAAAGAGCCT GACCTCTGAC CCAGCCTCTC ACGGTTTGAC CCTAGAAGAT CTGGACAGGC K CAGTGGGCAA GACTGTGGGA TGGCCCTGTG TTCACTGGCC ACCAGCCCCA ACTCAGGTGG CAGCCCTGGA GAAGACACTG GTATGCAGGG CCACATCCAC ATTGCTGTCT TCCATACCAT CTGAGGAGCA CTTGGAGACT ATACCCCAAG ACTCAGGCTG TGATGGGACC TAGCTGAGAG AACAGCAACA ACTTAGTGTC K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47999943 | NES11908743 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30940563 | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47999943 | NES11908743 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr6:89314958 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Plxna1 | plexin A1 | within coordinates | ||||||
Rr137390 | regulatory region 137390 | 1443 bp proximal | ||||||
Rr141614 | regulatory region 141614 | within coordinates | ||||||
Rr150842 | regulatory region 150842 | 1759 bp distal | ||||||
Rr150843 | regulatory region 150843 | 244 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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