rs30940615 SNP Detail

Summary

• ID
  rs30940615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127655100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACTGTCT TTTGTAACAG
  TTTTTAAGGC TTTTGCAGGC CAGGTTGATG GGAGAAGAAA GCCTGTGTCA CAGACCTGAG
  TGTCAGCAAT ATGGTACGGG AGGGGGAAAA ATGCAGTTTC CATTGCAGAA GCAATTTTGA
  CCAAACGGCC AGGCACCAAG CTCCTGAGAA ATGTCTCTTA GAGCTTGAAA ATGAAATGCC
  Y
  GGGGAGCACT GTACCGGGCC AAGCCCAGCT CTATCTGAAC ATCTCATAAA TGTCCCGACA
  AGCATAGCCT GACAGCGAAG AAAATGTAGG AGAACCAGTT CTGAAATGCA GTGAGACGGA
  ATAAAGGAAA GCTCAGGCTC AGCTGCTCAC GGAAGTTCAC ATGCACAAGC ATCCTAAGCA
  AGGAGCGACT GTTCGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45482023	mCV24302382	ABI	CRAMUS_MOUSE	f	SNP	C	C			T
ss51617423	NES14658780	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T	T	T		T	T	T	T		C
ss135873380	ENSMUSSNP5304610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957593	CHEV_3_127564369	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30940615					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51617423	NES14658780	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127655100 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	1733 bp downstream
Rr584887	regulatory region 584887	within coordinates
Rr584888	regulatory region 584888	1062 bp proximal
Tssr31614	transcription start site region 31614	134 bp upstream