rs30941729 SNP Detail

Summary

• ID
  rs30941729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151837977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAACTT TTTCCTCTCG
  TCTTGGCCCT TCCAAAGTGG TCCCCTGAGT AATTTTCAGC ACTTGGATAA TTTCCCTGCT
  CCAGAGAGTA TATCCTGTCT TTCAATATAA GAACACATCA GAAACAACAA TATGAACTAA
  CCAGTACCCC CCAGAGCTCG TGTCTCTAGC TGCATATGTA TCAGAAGATG GCCTAGTCAG
  Y
  CATCATTGGA AAGAGGCCCA TTGGTCTTGC AAACTTTATA TGCCCCAGTA CAGGGGAACG
  CCAGGGCCAA GAAGTGGGAG GGGGGGGAGG GGAATGGGGG GTAGGATAGA GGGGACTTTT
  GGGATAGCAT TGGAAATATA AATGAAGAAA ATACCTAATT TTTTTAAAAA AAGGACACAT
  CAGAAAGTAA CAGATTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45482038	mCV23509585	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss136101060	ENSMUSSNP3461266	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss321028216	CHEV_3_151795304	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30941729					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151837977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587462	regulatory region 587462			926 bp distal
Rr587463	regulatory region 587463			1193 bp proximal