rs30942183 SNP Detail

Summary

• ID
  rs30942183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42110160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GACCAGGTTT GCCATCAGGA
  R
  GAAATTGGGT CCAATGGAAG AGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss44979132	mCV24954848	ABI	CRAMUS_MOUSE	f	SNP	A	G	A				G	A
ss50819849	NES13535653	PERLEGEN	MM_PANEL2	f	SNP			A	A	G	A			A		G	G		A
ss146410860	ENSMUSSNP6633626	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
ss325811621	CHEV_19_42196211	CHEVERUD	SCREENING_POP	f	SNP										A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30942183					SNP	A	G	A	A	G	A	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819849	NES13535653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42110160 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	1554 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	within coordinates
Rr547821	regulatory region 547821	938 bp distal
Rr547822	regulatory region 547822	805 bp proximal
Tssr156483	transcription start site region 156483	1454 bp downstream