rs30943280 SNP Detail

Summary

• ID
  rs30943280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10922689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAATTTGA CTTAAAAGTT
  CTGTAACTGT TTAAGAAATT ATGTGGGCTT TTTATTTTTC AAGTTAAAAC TTGCAAGCGT
  GGAAAAGGAT GTGAGGGAAC ACACCTATGT TCCAGCACTC AGGAGGCTAG CAAGGCCTGG
  GCTGTGTCAG ACCTTGTTTC AAAAACAAGA AGTACCTCGG ACATGGGAAC ATCCTGCATG
  Y
  AGGCGCCAAT AGCTGCTTTT TCTCTTACTA GAGGCATCCC GGAAAACAAT ATTCTCCAAG
  GAGGTATACT CTACCGCAGC AAGTAGGGTG TGCATATGTG TGTATGTGTT TATGTATGTA
  TGCATGTATG TATATGTATG CATATGTATT TTATGAATGT ATGTGTTTAT GCATGTGTAT
  ATATGTGTAT ATGTGTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187504	NES12690962	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30943280					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187504	NES12690962	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10922689 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533831	regulatory region 533831	1631 bp distal
Rr533832	regulatory region 533832	1067 bp distal
Tssr150046	transcription start site region 150046	1747 bp downstream
Tssr150047	transcription start site region 150047	1628 bp downstream
Tssr150048	transcription start site region 150048	1600 bp downstream
Tssr150049	transcription start site region 150049	731 bp downstream