rs30943429 SNP Detail

Summary

• ID
  rs30943429
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:44153039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGAAT TTTTCCACAG
  AGTACATCAG CCATGTCACA TCCTATGTAG TTAGAGCTAC TTTTACCACA CTTACCGAAA
  TGGTCACCCA GTTTGTTCAT TTCCATATAG CAAACTTTAT TTGCACTCCT GGCTTCCTTG
  CCAAATATCC TCTTACACTG TGTCTCACGT TCATGACATG TCATTTTATA GCAATAACCT
  S
  CACCTGAGCA AGGGCTTCCA TTCACTATGT ACACATCTTC TGGACACTCA GCTGAAGTTC
  CATTGCACCA CTCTGGAAGG TCACACTCAT TTTTCTCTTG TCTACACACA GTGCCTGTTT
  GAAGGAACTG GCAATCTTGG CAACAAAGTC CAAAAGCACA TTGAGCACCA GGTTTGAGAA
  CACAGTCGCT GCTATAGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47500285	NES11464915	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30943429					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47500285	NES11464915	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:44153039 () rs orientation: forward

Symbol	Name	Function Class
Gm35629	predicted gene, 35629	within coordinates
Gm64845	predicted gene, 64845	743 bp downstream
Tssr81144	transcription start site region 81144	496 bp upstream