rs30943640 SNP Detail

Summary

• ID
  rs30943640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89292382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGACATCT TCTTCTAACA
  TGGTTTTCAT CCCAGCTTAC TGCTTTGTCC TCTGCTGGAG TCGTGGGGCT GCTCTTGGAC
  CCAGGAAAGA AATGCAGTAA AAACTCCCCT TGATCCAGTG TTGAGGACAG GCCTCAAGCC
  TCTGCCTTAG GTGCTCAGAG CCACCACAGT GCTGTATGGA TGGATTGCTG CCTTCTATAA
  R
  CTGTGTGGCA ATCAGACCCT GCTTGCTCTA ATCATGCTTG ATCACCCTGT GCAAGGGCAC
  TGATTGCTTC TTTGAGAGGT TGCCTCAGTC TCGGTGTCAG GGCTGGAGCC TGTGGCAGCC
  TAACGAGGGT AATTCAGGCA GAGCTGATTG TGCCAGAAAG TTGGGAGGGC TCAAGAGACA
  GAAACGGGCC ATGTCACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47999821	NES11909188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30943640					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999821	NES11909188	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89292382 () rs orientation: forward

Symbol	Name	Function Class
Gm26811	predicted gene, 26811	within coordinates
Plxna1	plexin A1	913 bp downstream
Rr141611	regulatory region 141611	within coordinates
Rr141612	regulatory region 141612	1219 bp proximal
Tssr62003	transcription start site region 62003	1283 bp downstream
Tssr62004	transcription start site region 62004	1349 bp downstream