rs30943642 SNP Detail

Summary

• ID
  rs30943642
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89294387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACGT GGGGCTGGAT AGTGAAGGCA
  W
  TGAGCCTAGA AGCTGTGCGT GTTCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47999823	NES11909189	PERLEGEN	MM_PANEL2	f	SNP		A	T	A			A	T		A
ss133371671	ENSMUSSNP4424785	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss321851896	CHEV_6_89267399	CHEVERUD	SCREENING_POP	f	SNP						T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30943642					SNP	A	A	T	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47999823	NES11909189	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89294387 () rs orientation: forward

Symbol	Name	Function Class
Gm26811	predicted gene, 26811	within coordinates
Plxna1	plexin A1	within coordinates
Rr137389	regulatory region 137389	1814 bp proximal
Rr141611	regulatory region 141611	987 bp distal
Rr141612	regulatory region 141612	187 bp distal
Tssr62003	transcription start site region 62003	718 bp upstream
Tssr62004	transcription start site region 62004	639 bp upstream
Tssr62005	transcription start site region 62005	567 bp downstream