rs30944154 SNP Detail

Summary

• ID
  rs30944154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10921818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGAGA GAAAGGATGA
  GGGGAGGGGA GAGAGGGAAG GAGGACGAAA GGAAGAGAAT CAGGAGAGAA ATTACCATGT
  TTCAGCACTG GGCATTGGGT ATCCCTGCAT CCTGCCATTC AGTAAGAAGA TAGGAATTCT
  TTGGGTTTCC CCCCCACCCC CCAAGGACAT TGTACCCTCC AATGGGTATA ACTGGGTTAG
  R
  TCCTGCTGGC AAGATAGAGC TCTTTGGATA GAGCTGGCAA GGTAGATTAA ATTATTTGAG
  ACAGTGTTTG AATGAAGATT AAGATTTTGT TTACCTTTTC CCGAAGTCAA AACTTTGGAT
  TTCTAACAAG AATTTTAACC TGCTAGCAAA GTGCAAACAA GAAATGCAGT GCTTCCCTTG
  TGCCTGCTGG AATTCAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49187508	NES12690987	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30944154					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187508	NES12690987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10921818 () rs orientation: forward

Symbol	Name	Function Class
Gm35814	predicted gene, 35814	within coordinates
Gm58912	predicted gene, 58912	within coordinates
Rr533831	regulatory region 533831	760 bp distal
Rr533832	regulatory region 533832	196 bp distal
Tssr150046	transcription start site region 150046	876 bp downstream
Tssr150047	transcription start site region 150047	757 bp downstream
Tssr150048	transcription start site region 150048	729 bp downstream
Tssr150049	transcription start site region 150049	135 bp upstream