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rs30944798 SNP Detail
Summary
  • ID
    rs30944798
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:138572723 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGTACTTA AAGTATTTTG
    TACTTTATCT TATTTTTTTA TTATTTTTGT TTGTTTGTTT GGTTTTTGGT TTTTGTTTTT
    TCGAGACAGG GTTTCTCTGT ACAGCCCTGG CTGTCCTGGA ACTCACTATG TAGACCAGGC
    TGGCCTCGAA TTCAGAAATC TGCCTGCCTC TGCCTCCCAA GTGCTGGGAA TAAAGGTGTG
    Y
    GCCACCATGC CCGGCTTTAT TTTATTATTA TTATTATTAT TATTGAGCTC TGGGAATTTT
    TATTCTTATA AATAGGACCA TATTTCTGAG TGACTGATCT TGTACTGTCT CCATTTGGAT
    TTCTTGTCCC CTGCCTCTAA AGTGTCAGAA CTCCCTCCTA TGAATGGCAA GATCTTGCTG
    AGTGGACAGC ATCCTCAGAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45482234 mCV23602022 ABI CRAMUS_MOUSE f SNP C T C C
ss135957747 ENSMUSSNP1835853 ENSEMBL ENSEMBL_Sanger f SNP C T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs30944798 SNP C T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:138572723 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm54195 predicted gene, 54195 1441 bp upstream
Tspan5 tetraspanin 5 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory