rs30944863 SNP Detail

Summary

• ID
  rs30944863
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88498533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTCATCT CTCAAGAGAT CAGCTGCCTT GGAGTCAGGG
  TGGAATTTGA GCCTCCCTTC AGCAGTGGCT GGGGAGAATG TAAGCACTCC TGAAGTCTGT
  M
  GACAGGCTTA GCTGAAATAG TTGGCTTCAG CACTGCCCTT GTCACCTTGA GGCTATCAGA
  TAGGATGACT GCCAACACAC ACACACACAC ACACACACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45482084	mCV23479702	ABI	CRAMUS_MOUSE	f	SNP	A	A
ss135470485	ENSMUSSNP2816612	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320835708	CHEV_3_88395148	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30944863					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88498533 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	788 bp upstream
Rr397772	regulatory region 397772	730 bp upstream
Rr579834	regulatory region 579834	within coordinates
Rr579835	regulatory region 579835	869 bp proximal
Tssr29977	transcription start site region 29977	1864 bp upstream
Tssr29978	transcription start site region 29978	1892 bp upstream
Tssr29979	transcription start site region 29979	1943 bp upstream