rs30945399 SNP Detail

Summary

• ID
  rs30945399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89341436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TATGTGGTCT TATTGAGTCC
  Y
  GAGAAGCAGC AGAAGAAGAA AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45984207	mCV22633826	ABI	CRAMUS_MOUSE	f	SNP	C					C		T
ss48000095	NES11907824	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T		T	T	T		T	C		T
ss133372209	ENSMUSSNP7141380	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							T
ss321852069	CHEV_6_89314448	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30945399					SNP	C	C	C	C	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48000095	NES11907824	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89341436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	1069 bp distal
Plxna1	plexin A1	1841 bp upstream
Rr146639	regulatory region 146639	835 bp distal
Rr152199	regulatory region 152199	within coordinates
Tssr57621	transcription start site region 57621	162 bp upstream
Tssr62008	transcription start site region 62008	1880 bp upstream
Tssr62009	transcription start site region 62009	1817 bp upstream
Tssr62010	transcription start site region 62010	861 bp upstream
Tssr62011	transcription start site region 62011	36 bp upstream
Tssr62012	transcription start site region 62012	41 bp downstream