rs30945948 SNP Detail

Summary

• ID
  rs30945948
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17813410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG ATCAGTTCCA AAGAAGTTGT
  K
  AGGTCCTTAG GAGGGGCATT TAACG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
ss44979268	mCV23246982	ABI	CRAMUS_MOUSE	f	SNP		G	G			G		T
ss50679596	NES13609744	PERLEGEN	MM_PANEL2	f	SNP	G			G	G		G		T
ss146130622	ENSMUSSNP1756279	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
rs30945948					SNP	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50679596	NES13609744	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17813410 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	within coordinates
Cpgi10666	CpG island 10666	447 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	1530 bp proximal
Rr544887	regulatory region 544887	1576 bp proximal
Tssr158513	transcription start site region 158513	1574 bp downstream