rs30946013 SNP Detail

Summary

• ID
  rs30946013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57762279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC CCAGCCCGCA GGCCACACGC
  Y
  CCGCGTGTGC GGCGCCCTTA TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39238665	mCV24900033	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss139591681	ENSMUSSNP2909022	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30946013					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57762279 () rs orientation: forward

Symbol	Name	Function Class
AU020094	expressed sequence AU020094	within coordinates
Cpgi6542	CpG island 6542	within coordinates
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	668 bp upstream
Rr492824	regulatory region 492824	330 bp distal
Rr492825	regulatory region 492825	35 bp distal
Tssr125870	transcription start site region 125870	18 bp downstream
Tssr125871	transcription start site region 125871	230 bp upstream
Tssr128966	transcription start site region 128966	634 bp downstream
Tssr128967	transcription start site region 128967	677 bp downstream
Tssr128968	transcription start site region 128968	747 bp downstream