rs30946697 SNP Detail

Summary

• ID
  rs30946697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC TTCGCATCAG CACTGCAGAC
  R
  TCGAGGGAGG GGGCGTCGTG CGCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44980303	mCV23614840	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss120007498	PARCsnp_1.17827	PARC_SEQ	INBRED	f	SNP			G	A
ss120010409	PARCsnp_1.07472	PARC_SEQ	INBRED	f	SNP			G	A
ss146184092	ENSMUSSNP251857	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320123274	CHEV_1_174144554	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30946697					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041990 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	737 bp downstream
Rr423487	regulatory region 423487	417 bp distal
Tssr15176	transcription start site region 15176	1348 bp upstream
Tssr15177	transcription start site region 15177	1294 bp upstream
Tssr15178	transcription start site region 15178	1261 bp upstream
Tssr15179	transcription start site region 15179	1245 bp upstream
Tssr15180	transcription start site region 15180	1025 bp upstream
Tssr15181	transcription start site region 15181	462 bp upstream
Tssr15182	transcription start site region 15182	617 bp downstream
Tssr15183	transcription start site region 15183	1558 bp downstream