rs30947228 SNP Detail

Summary

• ID
  rs30947228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191179320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACATGTTA CATGGCCTGA GAACAGGTGA GATGAGGTAG
  CTATTGTCAG CTTTTTTTAA AGCATAATAA AGGAAAGAGT GAGGAGAATG TCTTCATTTT
  Y
  GAGAGATGTG TAGTCATGTA TTTTAATTGA CCTCTACATA TCTCTACATT GAAATAGTCC
  AGAAAAATAG ATGTATATGA TAAGATGTAA GCAATAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss44979847	mCV23930568	ABI	CRAMUS_MOUSE	f	SNP							T		C
ss49546423	NES12907208	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	C	T	C		C	C	C	C		C
ss146505984	ENSMUSSNP6527445	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
ss320195314	CHEV_1_193271002	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30947228					SNP	C	T	T	T	T	T	T	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49546423	NES12907208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191179320 () rs orientation: forward

Symbol	Name	Function Class
Gm32200	predicted gene, 32200	within coordinates
Rr372646	regulatory region 372646	50 bp downstream
Tssr15793	transcription start site region 15793	1305 bp upstream