rs30947755 SNP Detail

Summary

• ID
  rs30947755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135707890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC CCTTTCTCAC TAACCCTACC
  R
  TTAATGACTA AAAACATCCC CCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45980331	mCV23370828	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G
ss51451033	NES14001692	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		G	A	A	A		A	A	A	G		A
ss133816877	ENSMUSSNP3857182	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321989798	CHEV_6_135680910	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30947755					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51451033	NES14001692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135707890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	1466 bp proximal
Gm14329	predicted gene 14329	1978 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63773	transcription start site region 63773	1012 bp upstream
Tssr63774	transcription start site region 63774	371 bp downstream
Tssr63775	transcription start site region 63775	1870 bp downstream