rs30947818 SNP Detail

Summary

• ID
  rs30947818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113283853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCC AGCAGGAGGG AGGGAGCAGG
  M
  GGCGGCAGAG GGGGAGGGGA GAAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45981699	mCV22332082	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss133564249	ENSMUSSNP5859369	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30947818					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113283853 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	245 bp upstream
Cpgi17838	CpG island 17838	within coordinates
Cpne9	copine family member IX	1321 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	218 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	219 bp downstream
Rr636483	regulatory region 636483	1246 bp distal
Rr636484	regulatory region 636484	within coordinates
Rr636485	regulatory region 636485	548 bp proximal
Rr636486	regulatory region 636486	1003 bp proximal
Rr636487	regulatory region 636487	1433 bp proximal
Tssr58189	transcription start site region 58189	58 bp upstream
Tssr58190	transcription start site region 58190	268 bp upstream
Tssr58191	transcription start site region 58191	347 bp upstream
Tssr58192	transcription start site region 58192	949 bp upstream
Tssr58193	transcription start site region 58193	975 bp upstream
Tssr62434	transcription start site region 62434	875 bp downstream