rs30947907 SNP Detail

Summary

• ID
  rs30947907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67962612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATTTTG TTTCATGTTT
  AAAATCCAGT CTTGGTGGCC AAAATGGAGC TAAAACCCAA GCGCTTTTCT TTCGAGCACA
  ATCTAGCTTA CAGTTTCTCT ATCTCTAAAC CAGTCCCCGC CCCCGTGCCC TTCGGAGTGT
  GTGGGTGATG GCTGGCCGTG ACATATTGCT GGGTTTTTCT GCAGCATCCA GCGAGCATGG
  M
  GAGAGTACTT GCAGAGGCAG GACCCCCTGG AGAAGCGGAG CCCATCCCCA CCTTCTGTCT
  CTTCAGACAA GCTGAGCAGC TCTGTCAGCA TGAACACCTT CTCCGACAGC AGCACACCCG
  TGAGTGTCTC CCGGCCGCTT GCTTGGACTG TCTTGCACTG AGTATTGTTA GCCCAGGCTC
  TGGTTCCCAG AAAAGATCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001227	NES10763603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30947907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001227	NES10763603	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67962612 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Coding-Synonymous
Iqschfp	Iqcj and Schip1 fusion protein	Coding-Synonymous
Rr577974	regulatory region 577974	1441 bp distal
Rr577975	regulatory region 577975	1516 bp distal
Rr577976	regulatory region 577976	1158 bp proximal
Rr577977	regulatory region 577977	1252 bp proximal