rs30947909 SNP Detail

Summary

• ID
  rs30947909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67962763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCGTGA CATATTGCTG
  GGTTTTTCTG CAGCATCCAG CGAGCATGGC GAGAGTACTT GCAGAGGCAG GACCCCCTGG
  AGAAGCGGAG CCCATCCCCA CCTTCTGTCT CTTCAGACAA GCTGAGCAGC TCTGTCAGCA
  TGAACACCTT CTCCGACAGC AGCACACCCG TGAGTGTCTC CCGGCCGCTT GCTTGGACTG
  Y
  CTTGCACTGA GTATTGTTAG CCCAGGCTCT GGTTCCCAGA AAAGATCTTG AGATGGTTTG
  TGATGGGGTG TGTGTGTGTG TGGAGGGGTG CTTATTTGCT GCATGGGAGC CCACAGTGAG
  GCTCTTGGCG TGGTAGAACT AAGACAAGAT TCATGATACA AAAATGAACT CAATGCGTCC
  ACAGAGTGGG GATTCTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001229	NES10763604	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30947909					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001229	NES10763604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67962763 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	Coding-NonSynonymous
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577974	regulatory region 577974	1592 bp distal
Rr577975	regulatory region 577975	1667 bp distal
Rr577976	regulatory region 577976	1007 bp proximal
Rr577977	regulatory region 577977	1101 bp proximal