rs30947911 SNP Detail

Summary

• ID
  rs30947911
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67963050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTTATT TGCTGCATGG
  GAGCCCACAG TGAGGCTCTT GGCGTGGTAG AACTAAGACA AGATTCATGA TACAAAAATG
  AACTCAATGC GTCCACAGAG TGGGGATTCT GTGCGACGTT GCTTCTCTAT CCCTGAGGTG
  GGTGCGCCCC ACCCCCCATT TCTTCTGGTG TGTTTTCTCT GGCATGTGCT TATGTGATGC
  K
  TGTCTGGTTG GAAAGTCATC TTCGTTATTA GGATTAGAAA GAGAACTTTT GGCAGGAAAA
  ATTGAAGTTG ATCACAGACT GAAATTGCTG AAATGGATTG AGTGTGGCTA AATGGGTTGC
  ACAGACCCCT CCTGAAAGGA CTCCTGATAG GGCTTGGGGG AACCTGCCGC ACCTGTACAG
  GCAGGACAGA CGCTGGCAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001231	NES10763605	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30947911					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001231	NES10763605	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67963050 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	mRNA-UTR
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577974	regulatory region 577974	1879 bp distal
Rr577975	regulatory region 577975	1954 bp distal
Rr577976	regulatory region 577976	720 bp proximal
Rr577977	regulatory region 577977	814 bp proximal