rs30949590 SNP Detail

Summary

• ID
  rs30949590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67963752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATATTAT TAAAAAATAT
  TCTTTTTATA ATTTGCTGTC ATACTTTCTC AGGCATATGA TGAGATATGG CAAAAGTTAC
  TTTCTTTGAA ATGTGTGCAG AAGTCTGCAT GGCTTGGCAT TATTGCCTAA TATTTTAATG
  TAGATGTGAG TTGATTTGTT GTTGTTGTTA TTGTTGTTGT TGTTGTTAGT TTAGTTAGTT
  Y
  TTAGAAGAAA GAAAAAGCTA GTTTTATAGC TGTGAAAGTA AAAAACGGCA GATCTGTTTA
  ATCGACCCAA CATTTGGTCA TTTGGAGAAA GGGATCCCTG TTACTGGCCT CCCGGTCACT
  AGAGGGCGCT TGTGAACCAC ATTGGAAAAT GCTGGGCGGT GCTTGGTTTA TAAGTAAAAA
  AGAAAGTGAA AATTGAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001251	NES10763616	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30949590					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001251	NES10763616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67963752 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	mRNA-UTR
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577976	regulatory region 577976	18 bp proximal
Rr577977	regulatory region 577977	112 bp proximal