rs30950397 SNP Detail

Summary

• ID
  rs30950397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112263078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGAGAGA TAGTCTACAA AGAGAAAGCT TTCCAAGTGT
  TCTACACATA GATGCTTTTG ACAAAACGTT GTATCCAGAA TATATAGATT TCTTCCACAA
  W
  CTGATTCCTA GTGGCCAACT TTAAAAAAGA GTTTTACTTA AGCATGTTTA TGGGTAGCTG
  CGCATCAGTG TTGTGCCATA CACATGCAGA TGCTTGCAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45980466	mCV22277624	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		T
ss60930434	NES16200121	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	A		A	T	A	T	A	A	T	A	T
ss133559948	ENSMUSSNP6012633	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30950397					SNP	A	A	A	A	A	T	A	A	A	T	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60930434	NES16200121	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112263078 () rs orientation: forward

Symbol	Name	Function Class
5031434C07Rik	RIKEN cDNA 5031434C07 gene	within coordinates
Lmcd1	LIM and cysteine-rich domains 1	within coordinates
Rr636320	regulatory region 636320	1582 bp proximal