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rs30950516 SNP Detail
Summary
  • ID
    rs30950516
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:29980767 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTCCC TGAAGCCAAC AAATTTTATC
    Y
    CATTTCCTGT TATTCCTAGG TTGCT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss46461787 mCV22974770 ABI CRAMUS_MOUSE f SNP C C T T
ss148672335 ENSMUSSNP6023391 ENSEMBL ENSEMBL_Sanger f SNP C T T
ss322132951 CHEV_7_31066361 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs30950516 SNP C C T T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:29980767 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700020L13Rik RIKEN cDNA 1700020L13 gene within coordinates
Cpgi18786 CpG island 18786 322 bp distal
Rr400235 regulatory region 400235 775 bp downstream
Rr644765 regulatory region 644765 1233 bp distal
Rr644766 regulatory region 644766 1278 bp distal
Rr644767 regulatory region 644767 445 bp distal
Rr644768 regulatory region 644768 within coordinates
Rr644769 regulatory region 644769 503 bp proximal
Rr644770 regulatory region 644770 894 bp proximal
Tssr65667 transcription start site region 65667 1200 bp downstream
Tssr65668 transcription start site region 65668 1154 bp downstream
Tssr65669 transcription start site region 65669 758 bp downstream
Tssr71721 transcription start site region 71721 918 bp upstream
Wdr62 WD repeat domain 62 923 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory