rs30950887 SNP Detail

Summary

• ID
  rs30950887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157268778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CATAGCTTCT CTCTCTCTCT
  S
  TGTGTGTGTG TTAATTGCTT TGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44979955	mCV22694007	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	G
ss145820906	ENSMUSSNP4064278	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320074083	CHEV_1_159371339	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30950887					SNP	G	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157268778 () rs orientation: forward

Symbol	Name	Function Class
Gm70539	predicted gene, 70539	within coordinates
Gm71050	predicted gene, 71050	647 bp upstream
Rr421381	regulatory region 421381	658 bp distal
Rr421382	regulatory region 421382	574 bp distal
Rr421383	regulatory region 421383	238 bp distal
Rr421384	regulatory region 421384	1739 bp proximal
Tssr9590	transcription start site region 9590	552 bp downstream