rs30951661 SNP Detail

Summary

• ID
  rs30951661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138561833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGAGCC ACCAAAATGG
  TATATATGGC TGATATCAAG ACAATTGTGA CTTTCCCTTG AAAAGCTCAG CACACACACA
  CACACACACA CACACACACA CACACACATA TATTTTTCTT CCTTTGTGAC TCTTAATGAA
  TCCCAGTCAT GCACTTGGGT CTGTCTTATT TTCCTGTGAG CTCCCCCCTT TCTTTTAATC
  Y
  TTATTTTAGA GCCCATTTTA AAATAATCCA ATTTTACTTT ATGAACTGAT AGTCCTGAAA
  TTCTTTTCTG CCTTGAAGCC AAACTTGAGG CCCATGGAAA GAGTCTCCAG ACCATGAGTA
  TGGTGACGTG GAACTCTGTC TCAATCCCCT TCACCACCGA CAAACCTAGG CCCATTTACC
  TAAGGGTCCA TAGCTGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss47001076	NES10875755	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs30951661					SNP	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001076	NES10875755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138561833 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			1880 bp downstream
Rr398073	regulatory region 398073			1753 bp downstream
Rr586214	regulatory region 586214			690 bp distal
Rr586215	regulatory region 586215			331 bp proximal
Rr586216	regulatory region 586216			1616 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant