rs30952046 SNP Detail

Summary

• ID
  rs30952046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10787083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGCTT AGTGTCCTGC
  CCCACTTACA GGGAAGAGAT GTAGTGACCT ACAGTAACAT TGCAGTCACC ACATCATGAC
  CGTTCTTTCA CACTGCTGCT GTTTCAGCAC TGGTTTTATA AGCTGGGTGA GGTAAGCACC
  CAGTGTAAGT GAACACAGAA CCTTACCTTG TAAGATACAT TTGAAAGACA AGTTAAATAT
  R
  CAAAAACAAC GTAATTTTAC CTTTTTCCCT TGCTCTTCTC ATAGACATAG AAAGACACAT
  ATACACAGAT GTGCATGCAG GCATGCAATC TCTCTCTCTC TCTCTCAAAT TGAATCAACA
  TTAGTCATAT AATTTAGAAT GTAATATATC AATTATATCG ATATGTAGAG AAAGTTAAGT
  AATGGGAAGG TTGCTACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49187958	NES12697019	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30952046					SNP	G	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187958	NES12697019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10787083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58661	predicted gene, 58661			1595 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Mir1a-2	microRNA 1a-2			1531 bp upstream
Mir1b	microRNA 1b			1516 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene			within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2			1516 bp distal
Rr533801	regulatory region 533801			1606 bp distal
Rr533802	regulatory region 533802			1241 bp distal
Rr533803	regulatory region 533803			560 bp distal
Rr533804	regulatory region 533804			340 bp proximal
Rr533805	regulatory region 533805			600 bp proximal
Tssr152437	transcription start site region 152437			1601 bp upstream
Tssr152438	transcription start site region 152438			601 bp downstream