rs30952048 SNP Detail

Summary

• ID
  rs30952048
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10787009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCAGTCA ATATTAGATA
  AGCATGCAGA AAGTCAGAAG CGTCCTTCCA AGTTGGTTCT TGTGCTTGAT TTACCTGTGA
  GCTTAGTGTC CTGCCCCACT TACAGGGAAG AGATGTAGTG ACCTACAGTA ACATTGCAGT
  CACCACATCA TGACCGTTCT TTCACACTGC TGCTGTTTCA GCACTGGTTT TATAAGCTGG
  S
  TGAGGTAAGC ACCCAGTGTA AGTGAACACA GAACCTTACC TTGTAAGATA CATTTGAAAG
  ACAAGTTAAA TATACAAAAA CAACGTAATT TTACCTTTTT CCCTTGCTCT TCTCATAGAC
  ATAGAAAGAC ACATATACAC AGATGTGCAT GCAGGCATGC AATCTCTCTC TCTCTCTCTC
  AAATTGAATC AACATTAGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187960	NES12697018	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952048					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187960	NES12697018	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10787009 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1521 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	1457 bp upstream
Mir1b	microRNA 1b	1442 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	1442 bp distal
Rr533801	regulatory region 533801	1532 bp distal
Rr533802	regulatory region 533802	1167 bp distal
Rr533803	regulatory region 533803	486 bp distal
Rr533804	regulatory region 533804	414 bp proximal
Rr533805	regulatory region 533805	674 bp proximal
Tssr152437	transcription start site region 152437	1527 bp upstream
Tssr152438	transcription start site region 152438	675 bp downstream