rs30952050 SNP Detail

Summary

• ID
  rs30952050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10786955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTTGAA ATTAGCCTAT
  GCCCAGATAT AAATTAATTT AACAATGAGA ATATATATCA GTCAATATTA GATAAGCATG
  CAGAAAGTCA GAAGCGTCCT TCCAAGTTGG TTCTTGTGCT TGATTTACCT GTGAGCTTAG
  TGTCCTGCCC CACTTACAGG GAAGAGATGT AGTGACCTAC AGTAACATTG CAGTCACCAC
  R
  TCATGACCGT TCTTTCACAC TGCTGCTGTT TCAGCACTGG TTTTATAAGC TGGGTGAGGT
  AAGCACCCAG TGTAAGTGAA CACAGAACCT TACCTTGTAA GATACATTTG AAAGACAAGT
  TAAATATACA AAAACAACGT AATTTTACCT TTTTCCCTTG CTCTTCTCAT AGACATAGAA
  AGACACATAT ACACAGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187962	NES12697017	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952050					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187962	NES12697017	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10786955 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1467 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	1403 bp upstream
Mir1b	microRNA 1b	1388 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	1388 bp distal
Rr533801	regulatory region 533801	1478 bp distal
Rr533802	regulatory region 533802	1113 bp distal
Rr533803	regulatory region 533803	432 bp distal
Rr533804	regulatory region 533804	468 bp proximal
Rr533805	regulatory region 533805	728 bp proximal
Tssr152437	transcription start site region 152437	1473 bp upstream
Tssr152438	transcription start site region 152438	729 bp downstream