rs30952052 SNP Detail

Summary

• ID
  rs30952052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10786496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGTCAC TAAGACATTT
  TGAAGGTTAA TTCAAAAGGA GACATTGAGA AGCTTTGAGA TTTGGTAAAG AATAGAAAAG
  GGGGTGCTGG GAGGGAAGTG GGGGAATAGG ATTTCTGCAG TCCATGAAGA AAGCTAGTAA
  GCTGCCAACG CGGGCCTCAG TCAGCAGTGC CGCTGAGACC TGCACCGTGC AGCAGCATGC
  R
  GATGTCTGTG GCCTGAGTAG TAAGCAAGGG GAGACATTTC ATAACCCAAA TCTTGAAGTA
  GCCTTTAGAA GCTATTGTGC TCTGGAGGCA GGGATGCAGG TTTACTAGAG GAGCGAGACA
  CAATTGAAAC AACTGTTTAA TTGAAAACAA TAAAGACCCT GTCTGTAGTG ATGTAATGTT
  AGTGGTAGAT TGTATATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187964	NES12697016	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952052					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187964	NES12697016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10786496 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1008 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	944 bp upstream
Mir1b	microRNA 1b	929 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	929 bp distal
Rr533800	regulatory region 533800	1687 bp distal
Rr533801	regulatory region 533801	1019 bp distal
Rr533802	regulatory region 533802	654 bp distal
Rr533803	regulatory region 533803	within coordinates
Rr533804	regulatory region 533804	927 bp proximal
Rr533805	regulatory region 533805	1187 bp proximal
Tssr152437	transcription start site region 152437	1014 bp upstream
Tssr152438	transcription start site region 152438	1188 bp downstream