rs30952107 SNP Detail

Summary

• ID
  rs30952107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57798160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCAGGTGAC AGCAGATGCT GGAGAGGATG TGGTGGAAGA GGAATACTTC TCCATTGCTG
  GTGGGGTTGC AAGCTTGTAC AACCACTCTG GAAATCAGTC TGGCGGTTCC TCACAAAATT
  GGACACAGTA CTTCAGAGCA TCCAGCAATA CCTCTCCTAG GCATATACCC AGAAGATGTT
  CCAACTGGTA ATAAGGTCAC ATACTCTACT ATGTTCATAG TAGTCTTATT TATAATAGTC
  AGAAGCTGTA AAGAACCCAG ATATCCCTCA ACAGAGGAAT GGATACAGAA AATGTGGTAC
  R
  TTTACACAAT GGAGTACTAC TCAGCTATTA AAAAGAATGA ATTTATGAAA TTCCTAGGCA
  AATGGATGGA TCTGGAGGTA GCCCAATCAC AAAAGAACTC CCATGATATG CACTAACTGA
  CAAGTGGATA TTAGTTCAGA AACTTAGAAT ACCCAAGATA CAATTTGCAA AACATATGAA
  ACTCAAGAAG CAGGAAGACC AAAGTGTGGA TATTTTGTTC TTACTTAGAA TTGGGGATTA
  AAATACCCAT GTAGGGGGTT ACAGAAACAA CGTTTGGAGC TGAGATGGAA TGAAAGATCA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45982130	mCV23275206	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss133245425	ENSMUSSNP6543772	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30952107					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57798160 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			1801 bp upstream
Rr631165	regulatory region 631165			1375 bp proximal
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant