rs30952198 SNP Detail

Summary

• ID
  rs30952198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67964821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGTGTAG TCTAGCTCTG
  TGGGTTGAGG GACAAAGAAA TCTTTAAACT TGTGCAAAAT ATAAGAGTCA AACAAATCTT
  TCAAAAAGTC ATTATTGCAA TCTGCTATCA GAAAGCAAGC AGAGCCTGAT CAGAGTTCTA
  ATAGGGGCCA TTGATCATAT CGATGACTTT GATATTAGCG GTGACAATCA TGTGACAGCA
  R
  CTGTACAAAA TAAGACACAC ACAAAATGTA AGACATAAGC AATATTAGAT ATTGAACTGT
  TTCCAAGCCT CCAGGGTGTC AGATAGGCAA ATATCCAAGA CTTAATTGTA TTCTCTCAGT
  GCTGGGCATC AAGCCTATGT AGGTCTACAA GTATTCTACC ACTGAGCTAT AGCCCTATCC
  TACAAGGCAC AATGTTAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001279	NES10763407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952198					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001279	NES10763407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67964821 () rs orientation: forward

Symbol	Name	Function Class
Iqcj	IQ motif containing J	895 bp downstream
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577976	regulatory region 577976	279 bp distal
Rr577977	regulatory region 577977	936 bp distal
Rr577978	regulatory region 577978	1758 bp proximal