rs30952399 SNP Detail

Summary

• ID
  rs30952399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138562756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGCAAAG CACTCATTCA
  CATAAAATAA AAACCAACCT TTTTCTTTAA AAAAGCCACG CATCTCGGTG ACTGTGCAGG
  CAGGTTACGG AGAGAGCTGG CTGCCTTCAG CCAGTTTTCA TGGGGCGGGA TGAGGGATGC
  CTGAGATGGT GCATTTCTGA TAAGTCCCCT GGTGCAGAGC CATCCTGTGA GGACCACTGC
  Y
  GGCCTGAGCC TTGTCGCACG CACGCATACT TGCAGACCCC TCAAGGGACC CACCATGCCA
  CACTTTGATC CTTCTGCATC TACTGTTGCC TGTGCAGGAG TGAGGCTCCC TTTGTCTCCC
  CTTTCAAACA CAGCTAGAAT GTTGCTTCCT AGGAAGTTTC CTCTGTCAGC ACCCCCACCC
  CAATGCCTCT GTTTCTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001084	NES10875704	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30952399					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001084	NES10875704	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138562756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			957 bp downstream
Rr586214	regulatory region 586214			1613 bp distal
Rr586215	regulatory region 586215			within coordinates
Rr586216	regulatory region 586216			693 bp proximal
Rr586217	regulatory region 586217			1904 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant