rs30952814 SNP Detail

Summary

• ID
  rs30952814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10786227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATGGAAA TTTATTTTCA
  AGGTAACAGA TTACAAATCA TTTAGCCAAG TTTTTGTTCT GTTTCTGTTT GCATTGAATG
  CAAATTCAAA TAGTTACGTG CTTGGTTTGT ATGAGATTAC TTTTTAAAAA TGGTTTTTAA
  TATAATGGAA AAGTACTAAA ATAACTTTTC CAAAGTCTCC ATAAAAGAGG AGAAGCACTT
  Y
  AGTCTGTGAA TCTCTGGGTT TTACCTTGAA TATTTAGCAC AAGAAAAAAA AAATAATTTG
  GGAGTGGCCT ATAGTCACTA AGACATTTTG AAGGTTAATT CAAAAGGAGA CATTGAGAAG
  CTTTGAGATT TGGTAAAGAA TAGAAAAGGG GGTGCTGGGA GGGAAGTGGG GGAATAGGAT
  TTCTGCAGTC CATGAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187966	NES12697013	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952814					SNP	C	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187966	NES12697013	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10786227 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	739 bp upstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	675 bp upstream
Mir1b	microRNA 1b	660 bp downstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	660 bp distal
Rr533800	regulatory region 533800	1418 bp distal
Rr533801	regulatory region 533801	750 bp distal
Rr533802	regulatory region 533802	385 bp distal
Rr533803	regulatory region 533803	110 bp proximal
Rr533804	regulatory region 533804	1196 bp proximal
Rr533805	regulatory region 533805	1456 bp proximal
Tssr152437	transcription start site region 152437	745 bp upstream
Tssr152438	transcription start site region 152438	1457 bp downstream