rs30952816 SNP Detail

Summary

• ID
  rs30952816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10785192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGAAA ATAATGAAAC
  CAAAATTTTT GGCTTACGAG ATCCTCTGAT TTTAATAGGT TATACATTTT GCCACATGTG
  AAGAATAGCT ATTATATGAG TAAAATCAGC TTTTTGTTGC TTTATTTTTC TTATTAGATT
  TGTTGGTCCT GATTTGATAG ATGTGAGACA CTAAAATATC CAATTGTGAA GACAGATAAT
  R
  GTTGATCCTG TGTCTCACTG TTTTGCGCTA GCAATACTAT TTCCTCTGTA GTAGTCACAT
  TTTAATCACG TGAGTATTCA GTGTAGAGTG TAGTATGATT TAATGTGAAA ATTAAAATCC
  ACTTCCACGG GACTTATCTC TTCAGTACAG TATAAGGGAT GTTAGTTTTC CCAGTGAATG
  GCTGGTCCTT TTGGAATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187968	NES12697012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952816					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187968	NES12697012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10785192 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	within coordinates
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	289 bp downstream
Mir1b	microRNA 1b	254 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	254 bp proximal
Rr533800	regulatory region 533800	383 bp distal
Rr533801	regulatory region 533801	143 bp proximal
Rr533802	regulatory region 533802	286 bp proximal
Rr533803	regulatory region 533803	1145 bp proximal
Tssr152437	transcription start site region 152437	286 bp downstream