rs30952818 SNP Detail

Summary

• ID
  rs30952818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10784816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGGATT GTAACAAATT
  ATTAGTTGTG AAAATGTTTC TTAAAGAATT ATGAAAACCT TTCAGACCTG TGGAATAACT
  AATGTAGCTG TTCATAACTC ATTGTGAGAA AAACAATGTC ATTTGATATA AGCAAGGACA
  ATACAGACTC AGGTTTTTGA CAGTTTGTTG CCAATATATC CTGTTTACAT TTTAGTTGTG
  R
  CCTAGGGTTT TGCCATTTTT ATCATTCTTT TTCATGCTGT AAGTATTAAC TGCACTTAAA
  GTACAGATTG GGTTAAGAAC TGACAAGCTG GAAAAGGACA AAAGCCAGTT TTCATGTGTG
  CAGTATAATT TTACTTAAAA GATAGTCTTT AAACATTATA GTTTCAATAG CTGTCAGAAA
  AGAAAATAAT GAAACCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49187970	NES12697010	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30952818					SNP	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187970	NES12697010	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10784816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58661	predicted gene, 58661			109 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Mir1a-2	microRNA 1a-2			665 bp downstream
Mir1b	microRNA 1b			630 bp upstream
Mir133a-1	microRNA 133a-1			1840 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene			within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2			630 bp proximal
Rr533800	regulatory region 533800			7 bp distal
Rr533801	regulatory region 533801			519 bp proximal
Rr533802	regulatory region 533802			662 bp proximal
Rr533803	regulatory region 533803			1521 bp proximal
Tssr152436	transcription start site region 152436			1904 bp upstream
Tssr152437	transcription start site region 152437			662 bp downstream