rs30952820 SNP Detail

Summary

• ID
  rs30952820
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10784684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAGGGA CAGCTGATCT
  AAGTGCTGGA TGTGACATTT CAAGTGATTC AAAACACTCC TAGACAAAAG CTGAACTTGG
  AAGCAACAAA ATCAGTTTTC AGTTTTATTT TATAAATGAA TAGCTAATAT TCTCTAAGGA
  TTGTAACAAA TTATTAGTTG TGAAAATGTT TCTTAAAGAA TTATGAAAAC CTTTCAGACC
  W
  GTGGAATAAC TAATGTAGCT GTTCATAACT CATTGTGAGA AAAACAATGT CATTTGATAT
  AAGCAAGGAC AATACAGACT CAGGTTTTTG ACAGTTTGTT GCCAATATAT CCTGTTTACA
  TTTTAGTTGT GGCCTAGGGT TTTGCCATTT TTATCATTCT TTTTCATGCT GTAAGTATTA
  ACTGCACTTA AAGTACAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187972	NES12697008	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30952820					SNP	A	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187972	NES12697008	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10784684 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58661	predicted gene, 58661			241 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Mir1a-2	microRNA 1a-2			797 bp downstream
Mir1b	microRNA 1b			762 bp upstream
Mir133a-1	microRNA 133a-1			1708 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene			within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2			762 bp proximal
Rr533800	regulatory region 533800			within coordinates
Rr533801	regulatory region 533801			651 bp proximal
Rr533802	regulatory region 533802			794 bp proximal
Rr533803	regulatory region 533803			1653 bp proximal
Tssr152436	transcription start site region 152436			1772 bp upstream
Tssr152437	transcription start site region 152437			794 bp downstream