rs30952822 SNP Detail

Summary

• ID
  rs30952822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10783554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTGCTG GAATTAAAGC
  AGTCTGCCAC CATGCCTGCA AACCAGGTTT TTAAGTAATT AAACTAGATG TTGAAAAAGG
  GTCATGTTAG CTACATATTT TTGTACTGCT TCTATTTTAG CTGAGGACTT AACAAGTTCT
  GATACGGAGT GGAAGGATAA GAATGGCCTT AAGAAAGTAA CTCTGTCCTT TAATTTATTA
  M
  TACATCACAC ATATCTTCAG TGTCATTCTT TGCTTTTGTT TATGTTGGCA TACTAACCCT
  AAGTTCAGAA ATTAACCTTC TTAAAAATCT ATTTTATTGA GGTGGGGTGG GGAGGAGATG
  TGGGATGTGG AACAGTTGGA GGGTAGAGGG GGGTGGGGGT GGGGAATGGA ATGTGGAGTG
  TAAAAAATAG ATTAAAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49187974	NES12697063	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	C	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30952822					SNP	C	A	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187974	NES12697063	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10783554 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1371 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir1a-2	microRNA 1a-2	1927 bp downstream
Mir1b	microRNA 1b	1892 bp upstream
Mir133a-1	microRNA 133a-1	578 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Mirc18	microRNA cluster 18, including Mir1b through Mir1a-2	1892 bp proximal
Rr533799	regulatory region 533799	1479 bp distal
Rr533800	regulatory region 533800	625 bp proximal
Rr533801	regulatory region 533801	1781 bp proximal
Rr533802	regulatory region 533802	1924 bp proximal
Tssr150041	transcription start site region 150041	1237 bp downstream
Tssr152436	transcription start site region 152436	642 bp upstream
Tssr152437	transcription start site region 152437	1924 bp downstream