rs30952869 SNP Detail

Summary

• ID
  rs30952869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9895215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCATATGGAA ATTATTTTCA CAGGGTTAGC TCTAGTTATA GCCATGTTCC AGGGAGACAT
  TTGATCAGAA AATCCAGAAC AGGGAACAGC TGGAATCTAG CTACTGAGGC AAAGTGTGTA
  TGTATTGTTT GAAAAGGAAG GATGAAATAT CAGTAGAGAG AACTCGGTTG GTGGCAGGAG
  TTCTTTTTGG CATACTGCAG TTGTGGCGTT GTGCCTCCAA AGGCTCTCAG AAGCTCACTA
  CTGGAAACTC ACTGTTGAGC AGCTTTGGAG AGACAGATAC ATGGCACGCA CATACATACA
  Y
  ACACACACAC ACATACACAC ACACACACAC ACACACAGAG AGGGGGGGGG TTAGGAGGGG
  AGAGAGATCC AGAGCATCAG CCAGGTAGCA GTGAGCATCC ATCTTAGAGT ACTTTTAGTG
  GTAAGGATAT CAGCTAGGAG GGTTTCAGTA AACATTCACT CACCTGGGGT GAGTCAGCTG
  CCTAGGAGCT TTCTATAGCA ATTGATTTCA GTATCTAAAA GATAAAGACC AGAATACCTA
  AGAAAGCCCA AAGTACCATG GCCACTCAAT CACCCCACAC CCTAGAACTC AGAAGAGAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45483713	mCV23605619	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
ss134577507	ENSMUSSNP6974542	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30952869					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9895215 () rs orientation: forward

Symbol	Name	Function Class
Gm55352	predicted gene, 55352	427 bp upstream
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr78180	regulatory region 78180	385 bp proximal