rs30953283 SNP Detail

Summary

• ID
  rs30953283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138573178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCAGAG AGGTCTTCTG
  ACATTTAACT TAATCAAGAT GTTAGTAAAA TAAACAGTGT TCTTACACCG TCGGACGGAA
  ACCGCTTGTC ACCCCACCCC CACCCACCAC TTCAGTGTTT GGAAAGGAAA CTCGGAGTCG
  CTCTGAGTCC AGTCACGCTC AGTCCTGGCC CTGGTTTCTT CCTGGGTGGG CAGCACTGTC
  Y
  GCTTGCCACC CAATCTTCAG TGGCCCAGTT AGGAGTTTTC AGTACTGTCG GGGGGGCGGG
  GGGGGGGGAT GATACCATGC CTTTTAAACC ACATTTCAGT TTCGGGGATG TTAAAATGTA
  AAGGGGGAAA AGTGTGTCTC AGAGCAGACA GGGTCTAGTG AGAACCAATT AAAGTTGGAA
  GCCCATCCAG TCCCGTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001194	NES10875306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30953283					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001194	NES10875306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138573178 () rs orientation: forward

Symbol	Name	Function Class
Gm54195	predicted gene, 54195	986 bp upstream
Tspan5	tetraspanin 5	within coordinates