GTGGATCCCC TAAAACTGTG GGTGTAGGTA TTTTATAGCC ATTCATGTAA AGGAGCAGAA TAGATCTCAA ACTAGAGTCC GTTAGTGTCT CTTAAATATA TAACTATTTG GAGCACAGTT CTGGAAGGAT GCTCAAGCCG GTGACAGAAG AAGGAGAATT AAACAGCACT CAGGGGCCGT CCGTCACCTT TGCTTTATCC R TGCACGTGCT CAGTGATTAG TATAGGCCCT GACTGTCCTA CTGTCTGACG TGAGGTGTTG TCATTCTTTC CAGTCCTGTG TACACATGTA GGCAGGACAA GGCCATACCT GGTATGGCAG GGAAGCTCTG AGGACAAGGG GGCCTGAGTT CATCTTCTAC CAGGGCTTTT CTGACTCTGA AAGGGGAGCT GCCTGTTAAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47001098 | NES10875645 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | A | G | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30953322 | SNP | A | A | A | A | A | A | G | A | A | A | G | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47001098 | NES10875645 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:138564627 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm65713 | predicted gene, 65713 | within coordinates | ||||||
Rr586215 | regulatory region 586215 | 1307 bp distal | ||||||
Rr586216 | regulatory region 586216 | 198 bp distal | ||||||
Rr586217 | regulatory region 586217 | 33 bp proximal | ||||||
Rr586218 | regulatory region 586218 | 1610 bp proximal | ||||||
Rr586219 | regulatory region 586219 | 1638 bp proximal | ||||||
Tspan5 | tetraspanin 5 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Tssr1062 | transcription start site region 1062 | 1651 bp upstream | ||||||
Tssr32014 | transcription start site region 32014 | 1623 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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