rs30953524 SNP Detail

Summary

• ID
  rs30953524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10783128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAAATCC ATTGAAGAGG
  CGATTTGGTT CCATTTTACC AGCTTTAGCA AAGCATTGCC GCTGCTGGTG TAGGATCCAA
  ACAGGTTAAA TGCTCTTTTG TAGAAATATA GCATGACAGG TATTAGAGGT TCCCACACTA
  GTGTACCAGT TGTTAAACAG AAAATTCACG TGTTTAGGCA TATGTCCTAC ACTGCTGTTC
  Y
  TGCAGCTCAC ATCAGTGCAT CTTTACTTAG TTCTTAAATG CACACAGTAG CCTTTCAAAA
  CCAACATTTG AAAGAACAGA TAAATCATCA TGTGTTTCAG AGTAATGCTT CTAAATTATC
  ACCATGTTGG TTTGTTCATT CAGGTCTCTG TGTAGTCCTG GCTGTCCTGG AACTCACTCT
  GTAGACCAGG CTAGCCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49187976	NES12697075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30953524					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49187976	NES12697075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10783128 () rs orientation: forward

Symbol	Name	Function Class
Gm58661	predicted gene, 58661	1797 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1	within coordinates
Mir133a-1	microRNA 133a-1	152 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene	within coordinates
Rr533799	regulatory region 533799	1053 bp distal
Rr533800	regulatory region 533800	1051 bp proximal
Tssr150041	transcription start site region 150041	811 bp downstream
Tssr152436	transcription start site region 152436	216 bp upstream