rs30954162 SNP Detail

Summary

• ID
  rs30954162
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136804155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC GACACTTTCC TACAGGCTAC
  M
  TCTCCTGTGG CTCCCCCTTT AAGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45980977	mCV24051051	ABI	CRAMUS_MOUSE	f	SNP	C		C					A	C
ss51454433	NES13991544	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C			C	C		A	C	C
ss133848547	ENSMUSSNP7004643	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321998854	CHEV_6_136775678	CHEVERUD	SCREENING_POP	f	SNP												C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30954162					SNP	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454433	NES13991544	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136804155 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	469 bp upstream
Cpgi18110	CpG island 18110	412 bp proximal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	126 bp proximal
Rr640073	regulatory region 640073	1066 bp proximal
Rr640074	regulatory region 640074	1697 bp proximal
Tssr2044	transcription start site region 2044	1300 bp upstream
Tssr59337	transcription start site region 59337	588 bp upstream
Tssr59338	transcription start site region 59338	604 bp upstream
Tssr59339	transcription start site region 59339	642 bp upstream
Tssr59340	transcription start site region 59340	673 bp upstream
Tssr59341	transcription start site region 59341	1257 bp upstream
Tssr59342	transcription start site region 59342	1655 bp upstream
Tssr63834	transcription start site region 63834	1124 bp upstream
Tssr63835	transcription start site region 63835	1061 bp upstream
Tssr63836	transcription start site region 63836	557 bp downstream
Tssr63837	transcription start site region 63837	590 bp downstream
Tssr63838	transcription start site region 63838	609 bp downstream
Tssr63839	transcription start site region 63839	663 bp downstream
Tssr63840	transcription start site region 63840	894 bp downstream
Tssr63841	transcription start site region 63841	967 bp downstream
Tssr63842	transcription start site region 63842	1029 bp downstream
Wbp11	WW domain binding protein 11	within coordinates