rs30954681 SNP Detail

Summary

• ID
  rs30954681
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37724601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGTTCT TAGGAATGGC
  TATGGTGACC ACCATTTTTC TGTGAGAAGT AAGACAAATG TGAGCCAGGA TCAGGAGTAA
  AGGCAGAGAG AACCCCAGAA GTTTCTTATC TGTGGCAATG AAGTATCAGC TTTTAAAAAT
  GTTTCAATGC CATGTGTGTA CTAGGGAGGC AGAGGCAGGA TGCTTAGAAG TTCAGGACCA
  R
  CCTTGGCTAC AGTGTAAATT TGAGCCTGCT TTGGATACAT GAGGCCCAAA CAAAACAAAA
  ACAACAAAAC AAAACAAAAC AAAACAAAAC AAAACACCCA AATCAAAACA GAACATTCTT
  AGGTAAAGAG TGAGTTGATT GAGGAATCTC TCCTAGTAGT TGGAGAAAAA GCAACCTCCC
  CTCTCCAAAG AATCCTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45483450	mCV25186444	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss134810613	ENSMUSSNP6020529	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30954681					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37724601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13101	CpG island 13101	1114 bp distal
Rr406863	regulatory region 406863	1448 bp proximal
Rr575537	regulatory region 575537	1777 bp proximal
Tssr28922	transcription start site region 28922	1618 bp downstream
Tssr33054	transcription start site region 33054	1967 bp downstream