rs30955113 SNP Detail

Summary

• ID
  rs30955113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138574237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATATTTT CGAGAGTAAA
  CACATGGTGC TTTCTCCCTA ACGCTGACCC CGTCTCCTCT TCTCTTTCAG TTTTTGGGAA
  TAACGTTTCT TGGAATCGGA CTGTGGGCGT GGAATGAAAA AGTAAGTGGA ACTCCTCGGA
  GAGGAACAGG TTTGGTTCAA GGCCGTGTCT GGTCTCGAGT GTTTCCCCTT GCTCTTTGAT
  Y
  AGCACAGGGG ACAAACAAAC CGTTGTCTGA TGAGAGGAAG CATTCTTCAC GACTGGGTGT
  CTCAAGTGCT CACGACATTA AAATAATCAG CAGAGCCACA GTGTAGTGAG TGTGGACCGC
  GGAGGATGTG ACTGGGGTTT GAGTCCAAGG CACAGCTCCA CCCAGCCACG ATGACCTCAG
  TCGGCTTATA AATGTCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47001214	NES10875317	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30955113					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001214	NES10875317	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138574237 () rs orientation: forward

Symbol	Name	Function Class
Gm54195	predicted gene, 54195	within coordinates
Tspan5	tetraspanin 5	within coordinates