rs30955747 SNP Detail

Summary

• ID
  rs30955747
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GTATAGAGGG CACCTCATTC
  W
  CGTCGTCAGC TTCTTGATAA CTGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44981168	mCV27587548	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss146361610	ENSMUSSNP1882536	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A		A
ss325801296	CHEV_19_38193231	CHEVERUD	SCREENING_POP	f	SNP				A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30955747					SNP	A	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	483 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1172 bp proximal
Tssr156244	transcription start site region 156244	1979 bp downstream
Tssr156245	transcription start site region 156245	407 bp downstream
Tssr159111	transcription start site region 159111	1940 bp upstream
Tssr159112	transcription start site region 159112	1890 bp upstream
Tssr159113	transcription start site region 159113	1825 bp upstream
Tssr159114	transcription start site region 159114	422 bp upstream
Tssr159115	transcription start site region 159115	366 bp upstream
Tssr159116	transcription start site region 159116	264 bp upstream
Tssr159117	transcription start site region 159117	250 bp upstream