rs30956717 SNP Detail

Summary

• ID
  rs30956717
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63401919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTAAAAG AAGGTAAAAT
  CAACATGGCT GCCCCACCCC CTTCTCTGAA AGGGCTGGCC TAAAAGGGTG CTGGTAGATG
  GCCAGGTGCC TGGAAGGGCA TTTGCAAGTA AACACATGGG CGGAGTGGGG GAGGTGTGGG
  GGAGGTAGTC CTGCCTAAGC TACAACAAGG AGCCCATAAT TCTAAGTGGT GTGTCAACGG
  W
  ACTGCAGTGA CTCAAAAGTT CCTGGAAAAG CGGTCCTCCC CGAGTCAGGC TCTCCACTAA
  CCGTATGTCC CCATCCAGCG CCTGGATAAC CGCGGCAAAG CTGCGACTGG TCTGATTGAG
  ATACTTGTAG CAGGTCTTCA AGCTGCTGCT GAGTGAGTCC TGTGGGCAGA GAAGACACAC
  CGCGGTGGCA GACGTGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49188723	NES12498541	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30956717					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188723	NES12498541	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63401919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6599	CpG island 6599	47 bp proximal
Fdft1	farnesyl diphosphate farnesyl transferase 1	within coordinates
Gm53861	predicted gene, 53861	1537 bp upstream
Rr297363	regulatory region 297363	within coordinates
Tssr129158	transcription start site region 129158	198 bp downstream
Tssr129159	transcription start site region 129159	455 bp downstream
Tssr129160	transcription start site region 129160	477 bp downstream
Tssr129161	transcription start site region 129161	497 bp downstream